Maybe he feels betrayed. In the original story, Naruto has faced a lot of discrimination in Konoha when he was young. So in the fanfiction, it could be that some similar or new issues make him decide to hide.
It could also be that he has some secrets that he doesn't want Konoha to find out. These secrets might be related to his new powers or some past events that he fears will cause chaos in Konoha if revealed.
He might be trying to protect Konoha in his own way. He could have discovered some kind of threat that he believes he can only deal with by staying away and hiding from the village so that the enemy won't target Konoha directly because of him.
Well, in some fanfictions, Naruto might outsmart Konoha by using his unique knowledge of the village's secrets that others don't know. For example, he could use his understanding of the old tunnels under Konoha to his advantage in a situation where he needs to escape or gain an upper hand in a conflict.
One possible reason could be fear. Naruto has the Nine - Tails within him, and some in Konoha might be too afraid of its power getting out of control. They may not fully trust Naruto to keep it in check.
Naruto might forgive Konoha because he realizes that holding a grudge won't solve anything. He has seen the destruction that hatred can cause, like during the Pain arc. So, he chooses to forgive in order to move forward and bring about positive change. Another reason could be his respect for the previous Hokages and their ideals for Konoha.
One popular theme is the daily life in Konoha. It could be about the characters going about their normal days, training, having fun at the local shops, or just hanging out with friends. Another theme is about Konoha during a war or a major threat. How the village prepares, the strategies they come up with, and how the characters, especially Naruto, contribute to the defense. And then there's the theme of Konoha's past. Stories that explore the history of the village, the founders, and how things have changed over time.
Another reason could be that he witnesses corruption or unfairness within the village leadership. If he sees that the system is rigged against certain groups, including himself or his friends, he could grow to hate Konoha and decide to leave.
One possible reason could be that Naruto discovers some dark secrets about the village leadership that go against his values. For example, if he finds out that they have been using underhanded means to maintain power.
Another reason might be that Naruto is seeking a greater purpose. In the fanfiction, his 'godlike' state could make him realize that there are threats out there that he can't face while being tied to Konoha. He may leave to protect the world on a larger scale, believing that he can be more effective away from the village.
One reason could be that Naruto has seen too much death and destruction in Konoha. His 'godlike' state might make him think that the only way to end all the suffering is to destroy the root cause, which is Konoha. He may believe that Konoha's system is so broken that it can't be fixed and needs to be completely eradicated.
Konoha would initially be in shock. Naruto is a hero to many in the village, and his sudden departure with Itachi, who was once considered a traitor, would cause a lot of unrest. The villagers might start to question the leadership of the village, wondering why Naruto left and if there was something they could have done to prevent it.
Because Naruto is like a beacon of hope for them. He's always been the one to inspire them, so they feel the need to protect him in return.