One possible reason could be that Naruto discovers some dark secrets about the village leadership that go against his values. For example, if he finds out that they have been using underhanded means to maintain power.
Maybe he feels betrayed by the people of Konoha. After all he has done for the village, if they turn on him for some false accusations or misunderstandings, he might decide to leave. He has always been an outcast in a way, and this could be the last straw.
One possible reason could be fear. Naruto has the Nine - Tails within him, and some in Konoha might be too afraid of its power getting out of control. They may not fully trust Naruto to keep it in check.
One possible reason could be feeling betrayed by the village leaders. Maybe they made decisions that Naruto strongly disagreed with, like how they treated certain groups or individuals. If Naruto felt that Konoha was no longer the place that stood for justice and fairness as he once believed, he might abandon it.
Naruto might forgive Konoha because he realizes that holding a grudge won't solve anything. He has seen the destruction that hatred can cause, like during the Pain arc. So, he chooses to forgive in order to move forward and bring about positive change. Another reason could be his respect for the previous Hokages and their ideals for Konoha.
Another reason might be that Naruto is seeking a greater purpose. In the fanfiction, his 'godlike' state could make him realize that there are threats out there that he can't face while being tied to Konoha. He may leave to protect the world on a larger scale, believing that he can be more effective away from the village.
One reason could be a major betrayal within Konoha. If he discovers that some of the village elders or leaders have been secretly plotting against him or his friends, he might feel so disillusioned that he abandons the village. For example, if they try to sacrifice his friends for the so - called 'greater good' of the village.
At first, Naruto is likely to be heartbroken. Konoha has been his home, and he has always longed for acceptance from the villagers. So being abandoned would be a huge blow to him.
One possible reason could be that the fanfiction misrepresents the true essence of Konoha. Naruto has a deep connection to Konoha, and if the fanfiction distorts its values, he might despise it.
One possible reason could be to seek stronger opponents outside of Konoha. Naruto might feel that he has outgrown the training opportunities in the village and wants to face greater challenges.
One possible reason could be that Naruto is extremely powerful and his skills are needed to protect Konoha from a new and powerful threat. His combat abilities, like his Rasengan and Sage Mode, are crucial for the village's defense.
One possible reason could be that Naruto feels betrayed by Konoha. Maybe he discovers some dark secrets about the village that make him lose faith in it. For example, if he finds out that the village elders were involved in unethical experiments or plots against his friends or family, he might not want to help.