Konan could be really interesting. In some fanfictions, she might have a different backstory or motivation that affects the Naruto vs Pain fight. For example, she could be secretly trying to stop Pain from going too far in his destruction of the Leaf Village.
Jiraiya could be a great addition. Since he was Pain's teacher, his presence could add a lot of depth to the story. He could offer insights into Pain's past and also help Naruto understand Pain better.
In many fanfictions, Naruto might hide his pain by putting on a big smile. He's always been the type to try and be positive in the face of his friends. He could also distract others with his goofy antics, like making a joke or doing something silly to shift the focus away from his inner turmoil.
Naruto could be afraid of being seen as weak. In the ninja world, weakness is often frowned upon. He has a reputation to uphold, especially in front of his family. He doesn't want them to think that he can't handle his problems, so he hides his pain. He also might be trying to be strong for his family. If they see him in pain, it could affect their morale. So, he pretends that everything is okay to keep their spirits high and to give them the impression that they can rely on him no matter what.
Hinata saving Naruto from Pain in fanfiction can take on many forms. It could be that Hinata has been secretly training and has a new set of abilities that she unleashes to save Naruto. This not only changes the course of the battle but also the dynamics between the characters. Fanfic writers might also add some emotional elements, such as Hinata's inner thoughts and feelings during the rescue. This makes the story more engaging and gives readers a fresh perspective on the Naruto - Hinata relationship.
He might face a lot of danger on his own. Since he's running away from Kushina who would usually protect him, he could encounter stronger enemies that he's not fully prepared to face.
He might miss out on some crucial training. Jiraiya has a lot of knowledge and skills to pass on, and by running away, Naruto could fall behind in his development as a ninja.
The biggest difference is the creativity of the fanfiction writers. In the anime, the fight follows a set storyline. But in fanfiction, anything can happen. For example, Naruto could suddenly gain a new power that was never in the anime. It's like a whole new world of possibilities.
Well, in the original Naruto story, Pain's actions are somewhat more straightforwardly presented as villainous. But in the fanfic, it might humanize Pain more. It could show his past traumas and how they led him to his extreme beliefs and actions.