In the fanfiction, it could be that Kakashi is being too hard on Naruto during training. He might be pushing him beyond his limits without proper explanation or support, causing Naruto to feel frustrated and angry. Naruto is a determined character, but everyone has their breaking point.
It could strain their relationship significantly. Naruto might start to distance himself from Kakashi, not trusting him as much as before. This could lead to a breakdown in their communication, which was previously a key part of their bond.
Danzo could also be the one to make Naruto angry. Danzo's underhanded tactics and secrets might be exposed in the fanfiction, and if they were to directly harm Naruto's friends or the village, Naruto would be furious at his actions.
Well, there could be. Fanfiction writers love to explore unique and unexpected relationships. Since Naruto and Kakashi are both popular characters in the Naruto universe, some writers might come up with such a plot for the sake of creativity and exploring different storylines. But it's not a part of the official Naruto story.
Maybe Jiraiya found out some dark secret about Naruto's past, like his connection to the Nine - Tails, and decided to keep it from Naruto. When Naruto eventually discovers this, he would be angry at Jiraiya for not trusting him enough to share the truth. This could lead to a rift between them in the fanfiction.
Another reason could be in a fan - created scenario where there are secrets involved. Hinata might be keeping a secret from Naruto that, when revealed, makes Naruto feel betrayed or deceived. This sense of betrayal could easily turn into anger. For instance, if Hinata has a connection to an enemy that she's been hiding from Naruto.
Naruto being angry at Kushina in fanfiction could stem from a feeling of abandonment. Even though she's his mother, if in the fanfiction she was absent during important moments in his life, whether physically or emotionally, Naruto could be angry. He might feel that she didn't fulfill her motherly duties. For instance, if she was more focused on other things like her own past traumas or relationships, and neglected Naruto's needs, that would surely make him angry.
Sasuke could be a popular character. He might be involved in the story in a way that either helps or hinders the situation where Naruto hurts Kakashi. For example, if Sasuke tries to stop Naruto from doing something stupid that would hurt Kakashi.
Another reason could be related to Kakashi's past actions. If there are some secrets or things Kakashi did in the past that come to light and Naruto doesn't like them, he could snap at Kakashi. Naruto has a strong sense of justice and loyalty, so if he feels betrayed or misled by Kakashi, his reaction could be to snap.
Kakashi might be initially surprised. But then, he would probably use it as a teaching moment for Naruto. He could say something like 'Naruto, stealing is not the way of a ninja.' And then give him a punishment like extra training.