Ben Tennyson is of course one of the most popular. Since he is the original wielder of the Omnitrix in the canon, he often takes center stage in fanfiction. Fans love to write about his new adventures and how he continues to grow and develop his skills with the Omnitrix.
Well, Ben is obviously one of the main characters as the story is centered around him and the Omnitrix. Gwen might also be a main character as she often plays an important role in Ben's adventures, providing support or using her own magical abilities to help out. Grandpa Max could be another main character, offering his wisdom and experience to guide Ben through various situations.
Obviously, Naruto would be one of the main characters since he has the Omnitrix. But we could also expect to see his usual friends like Sasuke and Sakura. They would be involved as Naruto uses his new powers. And perhaps some of the alien forms from the Omnitrix could be considered 'characters' in a way, as they would influence Naruto's actions and decisions.
Then there's Lyra. She's a female OC who is a brilliant scientist. She reverse - engineers some of the Omnitrix's functions and creates her own power - enhancing devices. She often teams up with other OCs and uses her intelligence along with the Omnitrix's powers to outwit their enemies.
Obviously, Ben is a must - include character as he is the main user of the Omnitrix. Gwen can also be a great addition as she has her own powers and can provide support or be a source of conflict. Grandpa Max is another good character, with his experience and knowledge.
Well, obviously Ben Tennyson is a very popular character. He is the main character who wields the Omnitrix after all. His different alien forms like Four Arms or Heatblast are also quite prominent in the fanfiction world.
Well, for example, Natsu's fire - dragon slayer magic could potentially interact with a heat - based alien form from the Omnitrix. Maybe when he's in that form, his fire magic becomes even more intense or has a different quality to it. He could use his dragon slayer skills to control the heat in a more precise way than the alien form normally allows.
In some fanfictions, there might be female versions of some of the alien species that are popular in the Ben 10 universe. These female alien characters with their own Omnitrix - like devices could be popular. For example, a female Heatblast or a female Four Arms. Their unique abilities and personalities would attract readers, and the stories could explore how they use their powers in different situations compared to their male counterparts.
Naruto himself is often very popular. Since it's related to his world, fans like to see how he would interact with the Omnitrix and its powers. He could use it in his journey to become Hokage, or to protect his friends in new and exciting ways.