It might be due to hidden secrets. If there are dark secrets within Konoha that Naruto discovers in the fanfiction, such as a conspiracy that involves some of the higher - ups. This would make him lose trust in the village as a whole.
One possible reason could be past decisions made by Sarutobi that Naruto didn't agree with. For example, Sarutobi's handling of the Uchiha situation. Naruto, who values friendship and fairness deeply, might have seen this as a sign of Sarutobi's inability to do what's right, thus leading to his distrust.
One possible reason could be that Naruto has had some past experiences within the team that made him feel betrayed or let down. Maybe there was a mission where he thought his teammates didn't have his back. Another reason might be that there are secrets among the team members that Naruto has discovered, and these secrets make him question their loyalty. For example, if one of his teammates was hiding a connection to an enemy, Naruto would naturally start to lose trust.
One possible reason could be miscommunication. Maybe Ron said something that Harry misinterpreted, leading to the distrust. For example, if Ron made a joke about Harry's abilities in a time of stress, Harry might take it the wrong way.
It could also be that in the fanfiction, McGonagall has shown some form of bias. Maybe she seems to favor certain students or groups over others, and Harry, being the one who always stands up for fairness, starts to distrust her when he notices this behavior. He might feel that she is not as just as he once thought her to be.
One possible reason could be that she discovers some of Dumbledore's past actions that seem morally ambiguous. For example, his handling of the situation with Tom Riddle when he was at Hogwarts. Maybe she finds out some details that make her question his judgment.
It could be due to miscommunication. In the fanfiction, perhaps there were misunderstandings within the family. For example, Naruto might have overheard something that made him think his family didn't have his best interests at heart, but in reality, it was all a big mix - up. So, he gradually lost trust in them.
It could also be due to Sasuke's secrecy. If Sasuke is constantly hiding things from Naruto, like his real intentions or new powers he's acquired, Naruto would naturally start to feel that he can't trust him. Trust is built on honesty and openness, and if Sasuke is being cagey, Naruto's trust in him will fade.
One possible reason could be past betrayals. Maybe he has been let down by people he thought were friends in the fanfiction world. For example, if someone he trusted shared his secrets which led to him getting into trouble.
Another reason could be outside influence. If there were dark forces trying to drive a wedge between Harry and the Weasleys, they might plant false ideas in Harry's mind. This could make Harry question the Weasleys' loyalty, even though they are truly his friends.
One possible reason could be that Harry discovers some secrets that Dumbledore has been keeping from him. Maybe Dumbledore has been making decisions about Harry's life without his knowledge, like how he was set up to face Voldemort. This lack of transparency might lead Harry to lose trust in him.