A story could focus on a powerful Sith Lord who sees the civil war as an opportunity to take over the Empire completely. He manipulates both sides of the conflict to further his own dark ambitions.
In some fanfiction, there are stories of Imperials who start to question their loyalty to the Empire during the Galactic Civil War. For example, an Imperial officer might witness the atrocities committed by his superiors and decide to defect, bringing valuable intelligence to the Rebellion. There could be a whole adventure around his escape and journey to the Rebel side.
Well, you could also have a plot where the secrets that were buried during the civil war start to surface in the aftermath. Maybe there were hidden alliances or betrayals that now come to light and create new tensions. It could involve characters having to deal with the truth about their past actions or the actions of their loved ones.
A young Imperial cadet who is forced to choose between loyalty to the Empire and his own moral compass during the civil war. He might end up being a key figure in the conflict.
Some fanfictions might explore the idea of new species getting involved in the Star Wars Total War. Picture a previously unheard - of alien race that has its own unique combat abilities and technology. They could tip the balance of power in unexpected ways. Additionally, there could be stories centered around the Jedi and Sith training new recruits in a more strategic, Total War - like environment. How would they adapt their teachings to large - scale warfare?
One idea could be exploring the backstories of the clone troopers in more depth. Maybe focus on a particular clone and his journey of self - discovery during the war. Another could be creating a new character, a young Jedi padawan who gets caught up in a mission that wasn't supposed to be for them but ends up playing a crucial role.
A great plot for Star Wars The Clone Wars fanfiction could be centered around a new, unknown planet that gets caught in the middle of the war. The planet has its own unique species and culture. The story could follow how the clone troopers and the Jedi interact with this new civilization, whether they try to protect it or use it for their own strategic advantages. Or perhaps a story where a group of clone troopers start to develop their own individual personalities and question their loyalty to the Republic due to some unethical orders they receive. This could lead to a conflict within the clone ranks and force the Jedi to take sides.
One idea could be exploring the origin of a new, mysterious force - user in the Shadow Wars. Maybe it's a forgotten Jedi or Sith technique that resurfaces and causes chaos. Another could be focusing on the relationship between a group of rebels and how they deal with the added threat of the Shadow Wars.
A possible plot could involve a misunderstanding. A powerful and mysterious magic item is found near the guild. Some members think it should be destroyed immediately as it might be cursed, while others believe it could be studied and used for good. The resulting conflict escalates into a full - blown civil war, with friendships and alliances being tested.
One idea could be that Spiderman tries to rebuild his relationships with the Avengers who were on different sides during the Civil War. He could start by reaching out to Iron Man, trying to understand his point of view better and also explaining his own actions.
Another plot could focus on individual characters' struggles post - Civil War. Like how Tony Stark tries to make amends with those he fought against while still dealing with his own guilt. Maybe he starts a project to help the victims of the Sokovia incident which was a big part of the rift between the Avengers.