Another reason could be that there are some misunderstandings between them. For example, Hermione might misinterpret Harry's actions or words as being too reckless or irresponsible, and she decides to push him away to avoid being dragged into what she perceives as a bad situation. Also, it could be related to her own insecurities. She might feel that she is holding Harry back in some way or that their friendship is becoming too complicated, so she takes the step of pushing him away to simplify things.
One possible reason could be that Hermione wants to pursue her own independent magical research. She is highly intelligent and may feel the need to focus on her studies without the distractions that come with being close to Harry. Another reason might be a disagreement over some major decision in the wizarding world. For example, if Harry has a different stance on how to deal with the remaining Death Eaters or how to reform Hogwarts' curriculum, Hermione, with her strong opinions, may choose to distance herself to avoid constant conflict.
He could be initially confused. Harry might not understand why Hermione is suddenly pushing him away. He might try to talk to her to find out the reason, but if Hermione is determined, he could be left feeling hurt and a bit lost.
In some fanfictions, there might be a new magical element or prophecy that makes Harry question Hermione's motives. If the prophecy says something about Hermione being involved in a dark plot, even if it's false, Harry may start to have doubts about her.
It could also be due to a series of unlucky events. Suppose Hermione's well - intentioned plans keep backfiring in a way that makes Harry question her judgment. Like when she tries to solve a problem but ends up making it worse, Harry might start to lose trust.
One possible reason could be that she is in a desperate situation. Maybe she needs something for a very important spell or potion to save someone's life and she thinks Harry won't notice or will forgive her. For example, if there is a rare ingredient that only Harry has access to and time is running out.
One reason could be jealousy. Maybe Hermione is getting more attention in school for her academic achievements, and Harry, feeling overshadowed, acts mean. For example, in some fanfictions, he might make snide remarks about her always having her nose in a book.
One possible reason could be a misinterpretation of their relationships. Maybe the author wants to explore a different dynamic where Harry and Hermione bond over Ron's perceived flaws, like his occasional laziness or his insecurities that might come across as annoying to them in this fictional scenario.
Jealousy can also be a factor. Maybe Harry becomes jealous of Hermione's close friendship with another character, or vice versa. This could create tension and ultimately result in a break - up. In some fanfictions, Hermione's intelligence and success might overshadow Harry at times, causing him to feel insecure in the relationship.
Power could be a reason. If there's a chance for Ron and Hermione to gain a great deal of power by turning against Harry, some fanfictions might explore this. For instance, a new dark power might offer them something they've always desired, like the ability to reform the wizarding world in their own image. They might think Harry would oppose this, so they betray him to get what they want.
It's possible that Harry hates it because he has a certain image of Ron and Hermione in his mind. Fanfiction can sometimes create versions of them that are completely different from what he knows. For example, some fanfiction might focus on a love triangle that he doesn't think exists in their real relationship. This divergence from his perception could lead to his dislike.