It could be that the portrayal of Konoha in the fanfiction goes against Sakura's values. Suppose the fanfiction shows Konoha as a place full of corruption or immoral behavior, and Sakura, being a character with her own set of beliefs, would naturally hate it.
Another possibility is that the relationships Sakura has in Konoha are distorted in the fanfiction. If her friendships or her connection to the village are misrepresented in a negative way, it can make her seem to hate Konoha in the context of that fanfiction.
One possible reason could be that the fanfiction misrepresents Sakura's character. Maybe it portrays her in a way that she would never act in the original context of the series, which makes her seem out of character and thus causes dislike. Another reason might be that the fanfiction focuses too much on other members of Team 7 and sidelines Sakura, making her seem less important or relevant than she actually is in the story.
One possible reason could be that it goes against the original essence of Naruto's relationship with Konoha. Naruto has a strong bond with Konoha, and yaoi fanfiction might distort that relationship in a way he wouldn't like. Another reason could be that Naruto is a character who values traditional values and friendship in a non - sexualized way, and yaoi fanfiction often sexualizes male - male relationships which he may find inappropriate.
Another reason could be that he witnesses corruption or unfairness within the village leadership. If he sees that the system is rigged against certain groups, including himself or his friends, he could grow to hate Konoha and decide to leave.
One reason could be a divergence in their characters' values. Maybe in the fanfiction, Kakashi's actions or decisions go against what Sakura believes in. For example, if he's shown as being too lenient with enemies when Sakura is all about strict justice.
Perhaps she discovers some dark secrets about Konoha's past. Things like the way the village treated certain clans or individuals unfairly. If she uncovers that Konoha was involved in some unethical actions in the past, it could make her lose faith in and start to hate the village. Also, if her loved ones were wrongly treated or sacrificed by Konoha's decisions, that would be a strong reason.
In lemon fanfiction, the 'sakura hates sasuke' scenario can stem from various factors. One possibility is that Sasuke's past actions, such as his association with dark forces or his disregard for the safety of the village which Sakura holds dear, could make her resent him. Additionally, if in the fanfiction's world, Sasuke has made decisions that directly oppose Sakura's efforts to build a relationship or a peaceful environment, it would be understandable for her to hate him. For instance, if he undermines her medical work in the village or her attempts to bring the shinobi world together.
One reason could be to seek greater power. Maybe they feel that Konoha no longer offers the training or resources they need to reach their full potential. So they decide to leave and explore other places where they can become stronger.
One reason could be to seek a new life away from the constraints of Konoha. Maybe they feel that they can't fully grow or explore their potential within the village. Another reason might be to protect Konoha in their own way. They could believe that leaving and dealing with threats from the outside would keep the village safer.
Perhaps Naruto discovers some dark secrets about Konoha that go against his values. Like if the village has been involved in unethical practices that he can't overlook. This could be things like using underhanded tactics against other villages, which would make Naruto, with his strong sense of justice, turn against Konoha.
One possible reason could be that the fanfiction misrepresents the Uzumaki clan or Naruto's connection to it. Naruto has a deep and complex relationship with his Uzumaki heritage, and if the fanfiction distorts it, he might dislike it.