Another source of inspiration

Deep in the endless reaches of space a human spaceship finds itself being controlled by its AI system inside are the highly advanced technology and in the interior the team of pilots could be found in cryogenic chambers it was the job of the AI to awaken the captain in case of emergency after the captain came second in command and so on if the situation called for it than it was the job of the AI to awaken the caption and the captain's girlfriend however deep in the holding facility the cryogenic chamber held the other individual the man named John. This spaceship suddenly became untraceable as the AI program controlling the spaceship destroyed the tracking devices that gave away the location of the ship and than began unauthorized programming it had been over 4 thousand years since the spaceship had been launched into space and this was the very first time that this happened. The AI goes rouge and targets those onboard can anyone stop it before they are all killed?