His Pokémon would probably be very confused at first. Pikachu, for example, might try to zap Ash back to his senses if he starts acting like a Team Rocket member. They would likely sense that something is wrong with Ash and would do their best to get him away from Team Rocket's influence.
Pikachu would probably be very confused at first. It's used to fighting against Team Rocket, not being on their side. It might resist and try to zap Ash to snap him out of it.
The Pokémon League might condemn Ash's actions. Despite Team Rocket's wrongdoings, killing is not an acceptable solution in the Pokémon world which values friendship and co - existence. Ash could face consequences such as being banned from Pokémon battles or certain areas. On the other hand, some trainers who have been harassed by Team Rocket for a long time might secretly support Ash.
Yes, in some Team Rocket fanfictions, Ash can be depicted in various ways that might involve him having some sort of connection to Pokémon in a different light. Maybe he could be experimented on by Team Rocket to gain Pokémon - like abilities, or be transformed into a Pokémon - like being in a very creative and out - of - the - box fanfiction concept.
The Pokémon might initially think it's some sort of joke or mistake. But as time goes on, if Ash seems serious about being with Team Rocket, they could become divided. Some of the more headstrong Pokémon might leave Ash, while others might stay with him out of loyalty but still be unhappy about the situation. They would be constantly trying to nudge Ash back to his old ways of being a good Pokémon trainer.
The Pokémon League would be in shock. They would see Ash and Misty as traitors and would probably send out teams to capture them. Pokémon trainers who looked up to Ash would be very disappointed. They might start to question their own values and the values of the Pokémon training world.
He was probably devastated. Ash had such a strong bond with his Pokémon. Losing them would be like losing part of himself. He might have initially been in shock, unable to believe what had happened.
Some of his more loyal Pokemon might try to resist the change. For example, Pikachu could use electric shocks to try and jolt Ash back to his senses. Pikachu has a strong bond with Ash and would be very confused and sad about his decision to join Team Rocket.