Well, in this kind of fanfic, usually there would be intense battles. Naruto is extremely powerful with his various jutsu like Rasengan. The Shinobi Alliance also has a lot of strong ninjas. Maybe the story would focus on Naruto having to face the combined forces of the alliance due to some misunderstanding. It could also explore Naruto's growth and how he tries to resolve the conflict without causing too much harm.
Floch does indeed die. His fate is a significant plot point in the manga's storyline. The circumstances surrounding his death add to the overall tension and drama of the series.
One possible plot twist could be that the real enemy is secretly manipulating the Shinobi Alliance to fight Naruto. So Naruto has to not only defend himself but also figure out who is behind it all. Another could be that Naruto discovers a hidden power within himself during the fight that changes the course of the battle.