One character could be Jiraiya. He could have known something about Naruto's true heritage all along and be the one to finally reveal it to Naruto. From the Greek side, Triton, Poseidon's son in mythology, could be a character. He could either be a rival or an ally to Naruto. In the ninja world, Shikamaru might be involved. His intelligence could be used to help Naruto understand and strategize with his new powers, especially when dealing with any threats that come his way because of his connection to Poseidon.
Well, it could be about Naruto having special powers related to Poseidon. Maybe he can control water in ways that are different from his normal ninja skills. He might also have a connection to the sea or underwater realms.
Perhaps there is a crossover event in the fanfiction. Some sort of magic or powerful artifact causes the Naruto universe and the world of Poseidon to collide. Naruto, being the adventurous and powerful character he is, gets involved in this chaos and ends up having a special relationship with Poseidon, either as an ally or having to face him as an adversary.
Sakura might also play an important role. She could be one of the first to notice the changes in Naruto due to his divine connection. Maybe she tries to help him understand and control his newfound abilities, while also dealing with her own feelings for him in this new context.
Well, in addition to Naruto, Gaia herself could be considered a main character in a sense, even if she might not be a physical presence all the time. If the fanfiction delves into Naruto's heritage, there could be other characters related to Gaia's past or other 'sons' or 'daughters' of Gaia in the Naruto world. And of course, Naruto's friends like Sakura would also be important. Her reaction to Naruto's new identity could range from shock to being supportive, and she might be involved in Naruto's new adventures related to his connection to Gaia.
Well, Sasuke is likely to still be a main character. His relationship with Naruto would be even more complex if Naruto is the son of Apollo. He might be jealous of Naruto's new powers or intrigued by them. Another could be Kakashi. He would play a role in guiding Naruto in understanding and controlling his powers inherited from Apollo.
Another main character could be Kakashi. As Naruto's mentor, he would have to guide Naruto in understanding and using his powers related to being Raizen's son. He might also be the one to protect Naruto from those who would seek to harm him because of his new identity.
It could be a rogue sea god who is jealous of Poseidon's power and wants to use Naruto to get to him. This sea god might try to manipulate Naruto into believing that Poseidon is a threat to his village and convince him to attack Poseidon first.
Obviously Naruto would be one of the main characters as it's about him being the son of Erebus. There might also be characters from the original Naruto series like Kakashi, who could play a role in helping Naruto understand his new identity.
Obviously, Naruto would be one of the main characters as it's about him being the son of Pain. Pain himself would also be a crucial character, even if he might not be physically present all the time. And characters like Sasuke, Sakura, and Kakashi would still likely play important roles as they are Naruto's friends and mentors in the original story and would have to interact with Naruto in this new, changed scenario.
Obviously, Naruto is one of the main characters. Since it's about him being the son of a witch, his character development and exploration of this new identity are central to the story.