The plot could take a turn where Naruto is hunted by those who want the Rinnegan for themselves. Orochimaru might be very interested in Naruto's new power. Also, other villages might see Naruto as a threat. This would force Naruto to either hide his power or use it to assert his dominance. It could also change his relationship with Sasuke, as Sasuke has his own power goals, and Naruto's Rinnegan might either make Sasuke more competitive or more willing to team up with Naruto.
It could also be a situation where Naruto's connection to Hagoromo is deepened in the fanfiction. For instance, Naruto might have a vision or a spiritual encounter with Hagoromo. During this encounter, Hagoromo realizes that Naruto is the key to bringing true peace to the ninja world. So, he imparts the power of the Rinnegan to Naruto to help him achieve this grand goal. This would be a more complex and involved process, perhaps involving Naruto learning about Hagoromo's past and his own role in the grand scheme of things.
In some fanfictions, it could be through a strange and powerful jutsu transfer. Maybe Madara, on the verge of defeat, decides to transfer his Rinnegan power to Naruto for some unforeseen reason, like seeing a new path for the ninja world in Naruto.
In some fanfiction concepts, the chakra of the Kyuubi is not just pure fox chakra but also contains remnants of the Sage of Six Paths' power. Since the Rinnegan is related to the Sage of Six Paths, when Naruto reaches a certain level of power and harmony with the Kyuubi, the dormant Rinnegan - like power within the Kyuubi's chakra awakens in Naruto. This could be a result of Naruto's strong will and his journey to master the Kyuubi's power which eventually leads to him obtaining the Rinnegan.
In Rosario Vampire fanfiction, Naruto's Rinnegan can completely change the power dynamics. His ability to see chakra and the additional powers of the Rinnegan like the Deva Path can make him a very formidable force. It might lead to him being either a target or a protector in the Rosario Vampire world.
In some fanfiction concepts, it might be due to a unique chakra interaction. Maybe the Kyuubi's powerful and ancient chakra somehow triggers a latent ability within Naruto that results in the manifestation of the Rinnegan. It could also be part of some kind of prophecy or destiny within the fan - created world of the story.
In some fanfiction concepts, there could be a spiritual or mental connection established between Naruto and Nagato. Since Naruto has this unique ability to understand and connect with people on a deep level. Through this connection, Nagato might pass on the power of the Rinnegan to Naruto. It could be like a transfer of not just the physical power but also the knowledge and understanding that comes with the Rinnegan.
Perhaps in the fanfic, Pein gives Naruto the Rinnegan to create a balance of power. With the Rinnegan, Naruto might face new enemies who are after this powerful dojutsu. He would then have to use his newfound power, along with his existing skills like Sage Mode and Rasengan, to protect his friends and the village. The story could also explore how Naruto's view of the world changes with this new power.
It's possible that the Sage of Six Paths has some sort of plan from the afterlife. He manipulates events so that Pein's Rinnegan goes to Naruto. This could be because the Sage foresees a great threat to the ninja world and believes Naruto with the Rinnegan can be the savior. The transfer might occur during a spiritual encounter between Naruto and Pein, where the Sage's influence is at work.
In this kind of fanfiction, the author might come up with a convoluted plot. For example, Itachi could have discovered an ancient technique that allows him to bestow the Rinnegan on Naruto. It might involve sacrificing his own ocular powers in a way that defies the normal rules of the Naruto universe. This would be a very creative and out - of - the - box idea, but that's the beauty of fanfiction.
Naruto's perspective on the ninja world could change. With the Rinnegan, he would see things in a different light, both literally and metaphorically. He might have to deal with new enemies who are attracted to his new power or new responsibilities that come with such a powerful dojutsu. His relationships with his friends and allies could also be affected as they may view him differently now that he has this extremely powerful ability.