In the 'mlp alternate universe mane 6 fanfiction', a great plot could be that the Mane 6 are time - travelers. They go back and forth in time, seeing different versions of Equestria. Sometimes they have to fix things that went wrong in the past to ensure the future of their world. This would give a lot of room for exploring different time periods and how the characters adapt to them.
Well, perhaps in this fanfiction's alternate universe, the Mane 6 are all from different species. Rainbow Dash could be a griffin, and they have to overcome the prejudices between their species to form their friendship. It could also be that they are in a post - apocalyptic Equestria, and they are on a quest to find the elements of harmony which have been scattered and lost.
One idea could be an alternate universe where the ponies have different elemental powers. For example, instead of Twilight Sparkle being a unicorn with magic related to friendship, she could control time. This would change the entire dynamic of the stories and the relationships between the ponies.
Twilight Sparkle is often popular. Her intelligence and ability to adapt can be really interesting in an alternate universe. Rainbow Dash is also a favorite. Her bravery and competitive spirit can lead to some exciting storylines in different universes.
One idea could be an alternate universe where the Fairy Tail guild is a secret organization in a steampunk world. The magic is powered by steam - powered devices and the characters have to adapt their powers to this new technology. For example, Natsu could use his fire magic to fuel steam engines in a more efficient way.
One idea could be a world where the darkspawn and the elves form an alliance. They might come together out of mutual desperation, the darkspawn seeing the elves' connection to the Fade as an advantage, and the elves seeing the darkspawn's numbers as a means to gain power and protection from the other races. Another plot could involve a Dragon Age universe where magic is completely outlawed. Mages would have to go into hiding, and templars would be more like a secret police force, leading to a lot of underground resistance and intrigue. A third idea is an alternate universe where the Qunari have taken over most of Thedas. Their strict way of life would reshape the cultures and societies of the other races in ways that are both fascinating and disturbing.
One idea could be that Naruto finds himself in a universe where the Akatsuki are the heroes. He has to figure out how to co - exist or even join them to get back to his own universe. Another plot could be Naruto entering a universe where everyone has a different elemental chakra, like some have sound - based chakra instead of the usual five. A third idea is that he hops into a universe where the shinobi world is a utopia, but there are hidden secrets that are threatening to destroy this perfect world and he has to help.
In the 'naruto juubi alternate universe fanfiction', it would be interesting if the characters' relationships were reversed. Like Sasuke could be the one trying to protect Naruto who has the Juubi's power, because he realizes that Naruto's power is the key to a new world order that could benefit all ninjas.
One interesting plot could be if Harry was sorted into Slytherin instead of Gryffindor. It would completely change his relationships and how he's perceived. He might have to deal with the prejudices of his own house while also trying to figure out his role in the fight against Voldemort.
In a Dragon Ball alternate universe fanfiction, there could be a plot where all the Saiyans survived the destruction of Planet Vegeta. They form an alliance with Earth and together they face new threats from a different galaxy. This would change the power dynamics completely. There could also be a scenario where the Kaioshin are the main antagonists. They use their divine powers in a corrupt way, and the Saiyans and Earthlings have to join forces to stop them. And what about a universe where the concept of ki is different? Maybe it can be transferred between people like a currency, and battles are fought not just with strength but also with strategic ki trading.
One interesting plot could be Percy in a steampunk alternate universe. He might have a mechanical sword and face off against steam - powered monsters. Another idea is an alternate universe where the Greek gods are modern - day celebrities, and Percy has to deal with the chaos of their fame while still being a demigod. Maybe in a fantasy - based alternate universe, Percy could be a wizard - like figure, using both water powers and magic spells.
Well, you could have a Pokemon alternate universe fanfiction where the types of Pokemon are completely different. For example, instead of Fire, Water, and Grass, there could be types like Light, Dark, and Spirit. The story could revolve around a trainer who discovers this new type system and has to learn all over again how to battle and catch Pokemon. It could also be an AU where all Pokemon are sentient and can talk freely, which would change the whole dynamic of the Pokemon - trainer relationship.