Well, it could be an ancient being that has been sealed away in a dimension for centuries. Naruto's arrival could break the seal accidentally, and this being, full of anger and a thirst for power, would become the main antagonist. Another option is a self - proclaimed god in a dimension who believes that Naruto's presence is an insult to his divinity. He would then try to eliminate Naruto. There could also be a group of anti - ninja fanatics in a dimension who view Naruto as a symbol of everything they hate about ninjas and would stop at nothing to get rid of him.
One potential antagonist could be a rogue ninja from another dimension who wants to use Naruto and Naruko's abilities for his own gain. He might be jealous of their power and try to trap them in different dimensions to study their techniques. Another could be a powerful entity that controls the portals between dimensions and doesn't want Naruto and Naruko messing around with the balance of different worlds.
It could be some powerful dimension - hopping villains who want to use the power of different dimensions for their own evil purposes. They might see Naruto and Naruko as threats to their plans.
Well, he might visit the dimension of the Sharingan's origin, where he could learn more about the Uchiha clan's secrets. Another could be a dimension full of powerful beasts, much stronger than the tailed beasts in his own world. And there could also be a dimension of pure chakra, where he can train and enhance his chakra control to an extreme level.
It could be some of the historical villains from Naruto's past that were thought to be long gone but are now resurfacing due to the time travel. For example, Madara Uchiha might be an antagonist if they travel back to a time when he was still active and plotting against Konoha.
It really depends on the specific fanfiction. However, it could be that they travel back to a time when Orochimaru was at his most devious, so he would be a main antagonist. His experiments and thirst for power could pose a great threat to Naruto and Shikamaru's mission in the past.
Often, it could be the same antagonists from the original Naruto series but in a different context. For example, Orochimaru might still be an antagonist if he tries to use the time - travel situation to his advantage, like getting his hands on some ancient forbidden jutsu.
It could be the same antagonists from the original Naruto series, like Orochimaru or Madara Uchiha. Since Naruto and Temari are time - traveling, they might encounter a younger version of these villains at a time when they were just starting their evil plans. Another possibility is that they create new antagonists by changing the past in some way. For example, if they prevent a certain character from dying, that character could turn out to be an antagonist in the altered timeline.
In some versions, Orochimaru could be a main antagonist. Since he has his own devious plans and is always looking for power, Naruto and Ino might have to deal with him all over again as they travel back in time. He could be trying to interfere with their attempts to change the past.
Often, Orochimaru can be a main antagonist. Since he has his own devious plans in the Naruto universe, in a time - travel scenario, he might oppose Naruto and Tsunade's attempts to change things for the better. He could be trying to use the time - travel chaos to his own advantage, like stealing forbidden jutsu from different eras.
Well, it could be Orochimaru. Even if they travel in time, Orochimaru's thirst for power and knowledge might make him an antagonist. He could see Sasuke and Shikamaru as threats to his plans, especially if they are trying to change the past which might interfere with his own schemes.