In a 'Naruto experimented on by Orochimaru' fanfic, the plot could start with Naruto being captured by Orochimaru's minions. As the experiments begin, Naruto starts to experience strange visions and memories that are not his own, perhaps remnants of Orochimaru's previous subjects. He tries to communicate with the Nine - Tails inside him for help, but the Nine - Tails is also affected by the experiments. Naruto has to endure physical and mental pain. His friends outside, like Sasuke and Sakura, start to suspect something is wrong when Naruto goes missing for a long time. They then embark on a dangerous journey to find and save Naruto from Orochimaru's clutches.
Well, in such a fanfic, a plotline might involve Naruto's friends trying to rescue him. They could discover Orochimaru's lair where Naruto is being experimented on. Meanwhile, Naruto himself could be developing new and unexpected powers as a result of the experiments, which he then has to learn to control. And there could be a race against time for Naruto's friends to reach him before Orochimaru's experiments cause irreversible damage.
Perhaps Naruto starts to have a connection to Orochimaru's other experiments or creations. He might find himself in a situation where he has to either help or fight these other 'products' of Orochimaru's mad science. Also, the fanfiction could explore how Naruto's friends react to what has happened to him. Do they trust him still? Or are they afraid of what Orochimaru might have turned him into?
One possible plotline could be Naruto being captured by Orochimaru and forced to endure various genetic experiments. Maybe Orochimaru is trying to extract the power of the Nine - Tails from Naruto in a more invasive way. Another could be that Naruto's friends, like Sasuke and Sakura, attempt a daring rescue mission while Naruto is in Orochimaru's clutches and they face off against Orochimaru's minions.
Well, perhaps in the fanfic, Orochimaru tortures Naruto as a form of revenge against the Leaf Village. He might use his various snake - related jutsu to cause pain and harm to Naruto. For example, he could make snakes constrict Naruto, slowly squeezing the life out of him while also injecting him with some sort of venom that causes excruciating pain. And all this while, Naruto is trying to find a way to break free and defeat Orochimaru, relying on his inner strength and the memories of his friends and his training.
Well, Orochimaru is a very ambitious and somewhat deranged character. His motives for experimenting on Naruto could be multi - faceted. Firstly, he's always been obsessed with the Sharingan and other powerful kekkei genkai. Naruto, with his own powerful chakra source, might be a step in his research to create something that can rival or even surpass the power of the Sharingan. Secondly, Orochimaru is known for his experiments on humans to enhance their combat abilities. Naruto's natural strength and growth potential could be used to develop new combat - enhancing techniques that Orochimaru could then use for his own purposes, like building a more powerful army or just to satisfy his own scientific curiosity.
A possible plotline could be Orochimaru's redemption. He realizes the error of his ways and joins Naruto in protecting the ninja world. He could use his vast knowledge of jutsu and forbidden arts to help Naruto against new threats.
His character could develop in a darker direction. The torture and manipulation from Orochimaru's experiments could make him question his values. However, it could also strengthen his resolve to protect his friends and the village. He may start to see the world in a more complex way, understanding that there are greater evils out there. And his newfound powers from the experiments could give him a sense of responsibility that he didn't have before.
He could have physical deformities. Orochimaru's experiments are often extreme and might cause Naruto's body to change in abnormal ways. Also, he might have mental trauma. The experience of being experimented on could leave him with psychological scars that affect his relationships and his ability to trust.
Another plotline could be a more psychological exploration. Orochimaru has always been a bit of an enigma, and his love for Naruto could be a way to explore his own humanity. Maybe he has a change of heart because of Naruto and starts to question his past actions. This could lead to a journey of self - discovery for Orochimaru, while Naruto is left to figure out how to deal with this new side of his old enemy.
Naruto could develop a new sense of determination. He might be determined to not let Orochimaru's experiments define him. Instead, he could use what has happened as a motivation to become stronger in his own way. He may also start to study more about the type of experiments Orochimaru was doing, not to replicate them, but to find ways to counter any future threats related to that kind of science.
Well, Naruto's friends would be in an uproar. Iruka, who has always been like a father figure to Naruto, would be heartbroken and would not rest until he knew Naruto was safe. The other Konoha ninja would also be affected. Neji, despite his initial coldness towards Naruto, has come to respect him. He would see Orochimaru's actions as a threat to the village and to his friend. Tenten would offer her weapon - related skills to help in any rescue attempt. And Hinata, who has deep feelings for Naruto, would be extremely distraught. She might even try to take on Orochimaru herself in a desperate attempt to save Naruto, regardless of the danger to her own life.