Perhaps a story where an old enemy of Ben's targets Rook to get to Ben. Ben feels guilty and protective. They go on the run, hiding in different places across the galaxy. Along the way, they meet some interesting characters who help them. In the end, they face the enemy together, with Ben using his Omnitrix and Rook using his upgraded Proto - Tool to defeat the bad guy.
One possible plot could be that Rook and Ben go on an adventure to a new planet in the Ben 10 Omniverse. They encounter a strange alien species that has a unique power. Ben tries to use his Omnitrix to transform into an appropriate alien to deal with the situation, but there are some glitches. Rook, with his Plumber skills, helps Ben figure out what's wrong and together they overcome the challenges and make new friends among the aliens.
An interesting aspect could be exploring Rook's past more deeply. Maybe he has some secrets from his time before being a Plumber that are related to the Ben 10 Omniverse. Ben could help him uncover these secrets while they are on a mission. For example, they could be investigating an ancient alien artifact, and as they dig deeper, Rook's past starts to unfold.
Another way is by showing their daily interactions. Like when they're just hanging out between missions, sharing stories about their different worlds. Ben could tell Rook about his adventures on Earth, and Rook could share stories about his Plumber training. This would make them understand each other better and grow closer. They could also have inside jokes that develop over time from these interactions. Also, having them train together to improve their combat skills would not only make them better fighters but also strengthen their relationship as they rely on each other during the training sessions.
Well, you could write a 'ben 10 omniverse fanfiction' where Ben loses his Omnitrix and has to rely on his wits and the help of his friends to still fight the bad guys. Or perhaps a story where the Omnitrix starts evolving on its own and gives Ben new and unexpected powers. Also, a plot where an old enemy from the past returns with a new and more dangerous plan.
A more character - driven plot could be about Ben trying to help an alien species that is being persecuted in the Omniverse. He uses his different alien forms to understand their culture and problems better. Along the way, he discovers that there are some dark secrets in the Omniverse's politics that are related to this species' situation. This would allow for a deeper exploration of the Omniverse's world - building and Ben's character growth.
One idea could be the reader having a unique alien ability that Ben discovers during an adventure. They then team up to fight a new villain that is immune to Ben's usual alien forms.
One possible fanfiction could be about Ben and Kai going on a new adventure in the Omniverse. Maybe they discover a new alien species that is causing chaos in a far - flung galaxy. Ben uses his Omnitrix to transform into different aliens to try and stop the threat, while Kai uses her martial arts skills to fight alongside him.
Perhaps a fanfic where Ben and Rook accidentally swap abilities. Ben has to deal with Rook's weaponry and combat skills, while Rook tries to control the Omnitrix. It would be full of comical moments as they struggle to adapt, but also a chance for them to learn more about each other's strengths and weaknesses.
One great Ben x Kevin fanfiction could be about their adventures in a parallel dimension. In this story, they might face new aliens and challenges that test their friendship even more. Maybe they find a powerful alien artifact that only works when they combine their unique abilities, leading to a deeper understanding of each other.
Well, in a fanfiction, they could be on a mission to save a planet that is on the verge of destruction. Ben uses his alien powers to hold off the immediate threats, like asteroids or attacking creatures, while Kai tries to find the root cause of the planet's problems, which could be some sort of evil technology or a corrupt leader.