A possible reason could be jealousy. If Naruto had a sibling who was always favored by their parents, he might grow to hate his family. He would feel like he was always in the shadow of his sibling and that his family didn't care about him as much.
Another reason could be false accusations. Suppose Naruto was wrongly accused of something by his family, and they didn't believe in his innocence. This could cause a rift between them and eventually lead to Naruto hating them. He would feel hurt and betrayed by the ones who should have supported him.
It could also be due to a change in values. If Naruto developed a different set of values from his family as he grew up, he might start to resent them. For example, if his family was very traditional and Naruto became more progressive, there could be clashes that make him hate his family in the context of a fanfiction.
One possible reason could be a misunderstanding. Maybe some false information was spread about his mother, making Naruto believe she had abandoned him. Another reason could be related to the secrecy around his mother. If he grew up feeling alone and not knowing about her, he might develop resentment.
One reason could be that some fans are very purist about the original Naruto story. They might feel that fanfiction often distorts the characters or the plot in ways that go against the essence of what Naruto is all about. For example, changing a character's personality completely to fit a romantic or dark and edgy narrative that doesn't align with the source material.
It could also be due to a lack of support. Naruto was constantly in trouble and trying to prove himself. If his family didn't show up in any way to support him and Konoha didn't do enough to encourage him in a positive way, but rather just punished him for his pranks, he might grow to hate them both.
One possible reason could be jealousy. Maybe Naruto has some special abilities or a prophecy surrounding him that makes his family members, who might be less favored, jealous. For example, if there's a prophecy that Naruto will be the most powerful ninja in the village, his siblings or parents might envy that future for him and start to hate him out of their own insecurities.
Another reason might be related to family politics. In some complex family structures in the Naruto universe, there could be different factions. Naruto might be on the wrong side of the power struggle within the family. His views or actions could be seen as a threat to the traditional power structure of the family, so they hate him.
One possible reason could be that he discovers some long - hidden family secrets that make him feel betrayed. For example, if he finds out that his family was involved in something unethical in the past. Another reason might be that he feels constantly overshadowed by his family's legacy and can't form his own identity within the family, so he decides to leave to find himself.
The different power scales. Naruto has his own progression of power through training and ninja ranks. Superman's power is on a completely different level like being able to move planets. In fanfiction, it might be hard to balance their powers in a way that makes sense to Naruto fans, so Naruto might seem to 'hate' it.
Perhaps in fanfiction, Boruto is associated with a group or ideology that Naruto opposes. This could cause Naruto to view Boruto unfavorably. Also, if there are false rumors or misinformation spread in the fanfiction world about Boruto, Naruto might believe them and start to hate Boruto until the truth is revealed. And sometimes, it's just a way for the writer to make an interesting and unexpected plot twist.
Perhaps in the fanfiction, Naruto is exposed to a new philosophy or way of thinking that promotes forgiveness. He might meet a wise character who teaches him about the power of forgiving one's family. Also, if Naruto experiences a similar situation where he has to make a tough choice that might be misjudged by others, he could then understand his family better and forgive them. It could also be that Naruto finds out his family had no other option in the situations they were in, and this realization leads to his forgiveness.
One possible reason could be jealousy. Maybe his brother has some special abilities or gets more attention that Naruto feels he should have. For example, if his brother is really good at a certain jutsu and is always praised for it while Naruto struggles, that could lead to resentment.