In an 'Obito kills Kakashi' fanfiction, it could start with a long - standing grudge. Maybe Obito discovers some new information that he believes Kakashi has been hiding from him all these years. This enrages him so much that he decides to take revenge and kills Kakashi in a fit of rage during a battle.
Some fans would be really shocked and sad. Kakashi is a very popular character, and his death at the hands of Obito would be a huge blow to many. They might feel angry towards the author for creating such a tragic scenario.
In this alternate storyline, it could lead to major changes in their relationship and the overall plot. Maybe Obito's feelings would prevent him from going down the dark path he did originally.
Naruto could be one of his allies. Naruto has this knack for seeing the good in people and would probably be willing to give Obito a chance to redeem himself. Also, Sakura, with her skills as a medic - ninja, could be an ally. She might help heal Obito if he was injured during the war and see the potential in him to be a force for good.
One possible motive could be to use Sakura as a bargaining chip. If he has some sort of plan against Naruto or the Hidden Leaf Village, Sakura, being a close comrade of Naruto, could be very useful. He might think that by restraining her, he can force Naruto to come to a certain location or make concessions.
One popular sakura and obito fanfiction is 'The Unseen Bond'. It delves into a world where Sakura discovers Obito's hidden past and tries to help him find redemption. Another great one could be 'Sakura's Encounter with Obito', which focuses on their chance meetings and how it gradually changes their relationship. And there's also 'A New Path for Sakura and Obito' that shows them working together to face challenges in the ninja world.
The sad story of Obito and Rin is a key part of the Naruto narrative. Obito was a young ninja with big dreams and a huge crush on Rin. When Rin was seemingly killed in front of him, it shattered his world. He thought that the ninja world was full of pain and betrayal. This led him to be influenced by Madara. He became one of the main antagonists, all because of his love for Rin and the unbearable pain of losing her. His journey from a hopeful young ninja to a vengeful villain is a tragic consequence of Rin's death.
A great Naruto Obito fanfiction could explore his relationship with Rin in more depth. Maybe it's a story where Obito has a chance to save Rin from dying, and how that would change his path. It could also show how his relationship with Naruto might be different as a result.
One common theme is redemption. Since Obito has a complex and often dark past, many female Obito fanfictions focus on his journey towards redemption with the help of a female character. For example, the female might be the one to show him the error of his ways.