The 'lemon' aspect might be a bit hard to come by in a clean way as it often involves inappropriate content. But for normal Korra and Mako fanfictions, you could also try FanFiction.net. Some stories there might show their relationship developing, their adventures together, and how they support each other, which can be really interesting to read.
The Legend of Korra comics are definitely worth a read. They capture the essence of the franchise and bring fresh perspectives. The quality of the storytelling and the visuals make them a great addition to the series.
There could be a fanfiction where the kiss is a moment of impulse. Mako and Korra have been through a lot, and the emotions just build up until they can't hold it back anymore. This could then lead to a series of events where they have to deal with the consequences of this sudden display of affection, like how it affects their friendships with others in the group.
Yes, there are likely some popular ones. Often, these fanfictions gain popularity because they explore the relationship between Mako and Korra in a way that the original show might not have fully delved into. For example, some might focus on the emotional build - up to the kiss, which can be really engaging for fans who are invested in their relationship.
Archive of Our Own is a great place to start. It has a large collection of fanfictions, and you can easily filter out any inappropriate content. Just search for Korra and Mako, and you'll get a variety of stories exploring their relationship, from friendship to romance, all within the boundaries of a proper and respectful narrative.