One possible reason could be that Naruto feels he has learned all he can from Jiraiya at that point. Maybe he wants to explore his own path independently and test his skills without Jiraiya's constant guidance.
For Naruto, he could be developed by showing how his interaction with Fem Jiraiya changes his view on female ninjas. He might become more respectful towards them and learn different fighting styles from her. As for Fem Jiraiya, her character could be developed by exploring her past. Maybe she had a difficult upbringing in a male - dominated ninja world and this has shaped her into a strong and independent ninja. This backstory can be revealed gradually as she trains Naruto.
One plot idea could be that in an alternate universe, Fem Jiraiya is Naruto's mentor instead of the male Jiraiya. She could teach him some unique jutsu that are different from the original. Another idea is that they go on a journey together where Fem Jiraiya has a secret mission related to Naruto's heritage and they gradually develop a deep bond. Maybe she has a different approach to training Naruto, focusing more on his chakra control from the start which gives Naruto an edge in his development.
It can create a sense of growth for Naruto. Without Jiraiya by his side, he has to rely more on his own instincts and the skills he has already acquired. This can lead to new character development as he faces challenges alone.
One possible reason could be that in this fanfiction, Jiraiya might be preoccupied with other important matters. Maybe he has a secret mission that demands his full attention and he simply doesn't have the time to train Naruto. Another reason could be that there is some sort of conflict or misunderstanding between them that prevents Jiraiya from taking Naruto under his wing. For example, Naruto might have unknowingly offended Jiraiya in some way, or there could be a prophecy or external force that is keeping them apart for the time being.
In fanfiction, Jiraiya seeing Naruto as Hokage can be a very emotional moment. It could be a vision Jiraiya has in a story where he's still alive, or perhaps it's a memory in a story set after his death. This often shows Jiraiya's pride in Naruto and his belief in Naruto's potential to lead the village.
Jiraiya's reaction might be complex. He might be in awe of Naruto's new power but also sad about his departure. He could see it as a natural progression in Naruto's journey, yet still feel a pang of loneliness. He might start to reflect on his own life and training methods, wondering if he could have done something differently to keep Naruto with him. At the same time, he would be eager to see what Naruto will achieve in the world with his newfound abilities.
They often make him seem irresponsible. For example, in normal Naruto story, Jiraiya is seen as a mentor to Naruto. But in bashing fanfiction, he may be shown as being more interested in his own adventures and leaving Naruto alone at crucial times.
It could be Orochimaru. Since Orochimaru has a long - standing feud with Jiraiya and is always up to no good. If Naruto ditches Jiraiya, Orochimaru might see this as an opportunity to manipulate Naruto. He could try to convince Naruto that Jiraiya was holding him back and that he can offer Naruto more power, all while having his own evil plans for Naruto.
In the Naruto universe, bringing someone back from the dead is extremely difficult. While there are some jutsu like the Edo Tensei that can reanimate the dead, it has its limitations and is often considered dark magic. For Naruto to revive Jiraiya, he would need to find a way around the natural laws of life and death. However, in fanfiction, anything is possible as it allows for creative interpretations and bending of the established rules.