One idea could be that Naruto, with his Mokuton abilities, gets transported to the DC universe. He might team up with Green Arrow in Star City. Since Naruto can create and control plants, he could help Green Arrow by using the Mokuton to create natural barriers during battles or to track enemies by sensing their movements through the plants. Another plot could involve Naruto meeting Poison Ivy. They could have an interesting dynamic as both have a connection to plants. Naruto might try to convince her to use her powers for good instead of causing chaos.
One idea could be that Naruto and his friends are transported to the DC Universe. Naruto's chakra could be seen as a form of magic in the DC world. He might team up with Superman to stop a powerful villain who is after both kryptonite and Naruto's chakra. Another plot could involve Batman being intrigued by Naruto's ninja skills and trying to incorporate some of them into his own combat style.
One plot idea could be a story where Naruto discovers he has the Mokuton and Rinnegan abilities due to some ancient curse or prophecy. He then has to learn to control these new powers while facing off against a new, powerful enemy that is immune to normal jutsu. Another idea is a fanfic where Naruto uses his Mokuton and Rinnegan to travel to different dimensions to find a way to save the Hidden Leaf from a looming disaster. Or perhaps a story where he has to team up with old enemies who are also intrigued by his new powers and together they form an uneasy alliance to fight a greater evil.
One interesting plot could be the main character exploring the unique abilities of Mokuton Sage Mode in new and unexpected ways. For example, they might discover how to combine it with other ninja techniques to create powerful new jutsus.
Maybe the Mokuton Prodigy is tasked with restoring a forest that has been destroyed by dark magic. Along the way, they face various challenges and make new allies. This could involve battles with creatures corrupted by the dark magic and learning new Mokuton techniques to revive the forest.
One idea could be that Naruto discovers his mokuton abilities can create a special forest that only Hinata can enter. In this forest, they train together and their bond deepens as Naruto shows Hinata the unique powers of the mokuton. Another could be that an enemy attacks the village and Naruto uses his mokuton to protect Hinata, and this event makes them realize their true feelings for each other.
Another plot could involve Gohan being mistaken for a new metahuman in the DC universe. As he tries to find his way back home, he gets caught up in a conflict between the Justice League and a group of supervillains. His Saiyan powers could be the key to resolving the situation.
One idea could be Goku ending up in the DC universe and having a friendly spar with Superman. Their different power sources and fighting styles would make for an exciting encounter. Maybe Goku learns about Kryptonite and how it affects Superman, which gives him a new perspective on weaknesses.
One idea could be Wolverine getting transported to the DC universe and teaming up with Batman. They could combine their detective skills to solve a mystery that involves both mutants and metahumans. For example, a new villain is creating chaos in Gotham by using some sort of technology that affects Wolverine's healing factor in strange ways.
One idea could be the Boys teaming up with a DC hero like Superman, but then realizing his 'good guy' image might be a facade too. Another could be Homelander facing off against Batman in a battle of wits and power.
One interesting concept could be Naruto having a special connection with mokuton (wood style) that is different from what we see in the original series. For example, he might be able to combine mokuton with his regular jutsu in unique ways, like a mokuton - Rasengan fusion.