One idea could be that the Young Justice team has to prove themselves to the Justice League during a major alien invasion. The League initially doubts their abilities but as the battle progresses, they see the unique skills and teamwork of the young heroes.
In a crossover fanfic, it could be that a group of villains has created a device that can swap the powers of the heroes. So, members of the Young Justice end up with the powers of Justice League members and vice versa. This leads to chaos and hilarity as they all have to adjust and still fight the villains.
Perhaps there's a powerful magical artifact that has been stolen and both the Young Justice and the Justice League are after it. However, they have different ideas on how to handle it. The Young Justice team wants to be more proactive while the League is cautious, leading to some tense moments and great character development.
One idea could be that the Young Justice team gets accidentally transported to an alternate dimension where the Justice League has turned evil. The Young Justice members then have to figure out how to reverse the situation while also evading capture from their once - heroes. Another could be a time - travel plot where the Young Justice team travels back in time and teams up with the early days of the Justice League to stop a threat that was thought to be long gone but has resurfaced in their own time. A third idea is that a powerful new villain emerges who can only be defeated by a combined effort of the Young Justice and Justice League, but first they have to overcome their differences in fighting styles and leadership.
A cool plot could be a time - travel related crossover. The Young Justice team travels back in time and meets the younger versions of the Justice League members. They have to work together to stop a time - traveling villain from changing history in a way that would destroy the future. Or perhaps there's a magic - based crossover where a powerful sorcerer is causing chaos. The Justice League, which is more used to physical threats, has to team up with the Young Justice, some of whom have magic - related powers, to defeat the sorcerer.
One idea could be a crossover where the Young Justice team has to team up with the Justice League to face an interdimensional threat. Maybe a powerful villain from another dimension is trying to invade Earth and the combined skills and powers of both groups are needed to stop it.
Maybe a story where some of the younger members of the Young Justice team are frustrated with the Justice League's methods and decide to take on a mission on their own, but end up getting in over their heads and have to call in the League for help. This could lead to a lot of character development and some interesting dynamics between the two groups.
One idea could be a misunderstanding that leads to a battle. Maybe a villain manipulates the situation so that Young Justice thinks the Justice League has turned evil. For example, the villain uses mind - control technology on some of the League members and Young Justice has to fight to save them.
One idea could be a misunderstanding that leads to a fight. Maybe the Justice League mistakes some of Young Justice's actions as being too reckless and end up in a battle. Then they realize they were wrong when a real threat emerges and they have to work together.
A crossover with the Avengers. Picture the Justice League and the Avengers having to work together to stop an interdimensional threat. There would be clashes in leadership styles between Captain America and Superman, and also a lot of cool moments as different power - sets are combined to fight the enemy.
One idea could be exploring the backstories of the lesser - known members in more detail. For example, Martian Manhunter's life on Mars before coming to Earth.
A cool plot could be a race between The Flash and Gotenks. They both pride themselves on their speed, so it would be interesting to see how that pans out. Also, perhaps Vegeta could befriend Batman as they both have that brooding, serious personality. They could exchange combat and strategy tips. And what if the Dragon Radar was used by the Justice League to track down an energy source that was causing chaos in both universes?
One idea could be that the Covenant from Halo discovers Earth while the Justice League is busy dealing with a local threat. The League has to quickly adapt to this new alien threat that has far more advanced technology than most of their foes. They might have to team up with Master Chief, who is also on a mission to stop the Covenant's invasion plans.