A group of rogue shinobi who have a vendetta against the Hidden Leaf Village might be the kidnappers. They see Naruto as a means to get revenge on the village. They think that by taking away the son of the Fourth Hokage, they can cause great pain and disruption to the Leaf.
It could be Orochimaru. He is always on the lookout for powerful specimens to experiment on or train in his ways. Naruto, as the son of the Fourth Hokage, would be an extremely appealing target for him at birth.
Perhaps a mysterious and long - forgotten clan kidnaps Naruto at birth. This clan has some ancient prophecy or grudge related to the Uzumaki clan. They believe that by taking Naruto, they can either fulfill the prophecy in their favor or settle the old score with the Uzumaki and by extension, the Leaf Village.
It could be a rogue ninja who wants to sell Naruto to the highest bidder. There are always those in the Naruto world who are after power and money.
Well, it could be a secret organization that has been operating in the shadows. They might have some ulterior motive related to Naruto's power or his connection to the Nine - Tails. Maybe they believe that by kidnapping Naruto, they can control the Nine - Tails and use it for their own purposes. Another option is a jealous ninja from within Konoha. This ninja might feel overshadowed by Naruto's achievements and popularity and decides to kidnap him to get him out of the picture. Also, a powerful and ancient being awakened from a long slumber could be the kidnapper. They see Naruto as a source of energy or a key to something they desire.
Well, it could be an obsessed fan who wants to keep Naruto all to themselves in the fanfiction. Maybe they think Naruto has some special power they can use for their own gain.
It could be an old enemy of Keith's, someone from his past who has a vendetta against him. Maybe a former rival from his days in the military academy who has now turned to more devious means.
In some creative fanfiction, it could be an alternate version of Spiderman himself from a different dimension. This Spiderman has gone bad and kidnaps a fan from our dimension as part of some grand, dark plan that involves crossing dimensions and causing chaos.
A power - hungry nobleman from a neighboring land could be the kidnapper. He might believe that by having Rapunzel in his possession, he can gain some sort of political advantage or use her as a bargaining chip against her kingdom.
It could be Orochimaru. He's always been interested in obtaining powerful individuals for his experiments, and Naruko with her unique abilities would be a prime target.
It could be a new villain that has emerged, someone who is jealous of Gohan's power and wants to make it his own. This villain might be from a far - off planet and has heard of the Saiyan legend.
It could be a group of rogue Decepticons who are acting on their own. They might not follow Megatron's orders but still see value in kidnapping Arcee. Maybe they have a personal vendetta against her or think they can get rich by selling her to the highest bidder in the Cybertronian underworld.
Maybe it's a group of villains working together. They could be from different factions but united by the idea that Izuku has the potential to become a huge threat to their plans. They might kidnap him to either eliminate him or turn him to their side. Also, it could be a lone, obsessed fan of a villain who wants to prove themselves by bringing Izuku to their idol.