The Death Eaters are an obvious choice. They've always been after Harry, so they could easily be the ones to kidnap him. They'd want to take him to Voldemort to prove their loyalty and also to finally get rid of Harry for good.
The Death Eaters are a likely choice. Since Snape was a double agent, some of them might have suspected his true loyalties all along. Once they got the chance, they would kidnap him to either punish him or to get information out of him about the Order of the Phoenix.
It could be the Separatists. They might see Anakin as a valuable hostage to use against the Jedi and the Republic. His skills as a Jedi Knight make him a prime target for them to gain some sort of leverage in the war.
The Yiga Clan could be likely kidnappers. They've always been enemies of Link and would love to get their hands on him. They might see kidnapping him as a way to stop him from interfering in their plans. Another possibility is the Gerudo thieves. Although not all Gerudo are bad, there could be a group of them who think Link has something valuable and decide to take him hostage.
It could be a rival family who wants to use Tsuna as a bargaining chip against his own family.
It could be some rogue Hollows who see Ichigo as a big threat and think that by kidnapping him, they can eliminate that threat.
The kidnappers could be a group of hired mercenaries. Some powerful and wealthy person who has something to hide might have hired them. This person could be involved in illegal activities and Castle was on the verge of uncovering the truth, so they order the mercenaries to take Castle out of the picture.
It could be a rival gang. They might see Ponyboy as a threat or a way to get back at his own gang. Another possibility is a deranged fan of his, someone who has an unhealthy obsession and wants to keep him all to themselves. Or it could be a group of criminals who mistake Ponyboy for someone else who has something they want.
It could be a jealous rival of the spirit animals' owners. This person might be envious of the special bond and powers that come with having a spirit animal and decides to kidnap them to spite the owners.
Maybe a secret admirer who is too shy to approach her normally. They think that by kidnapping her, they can have some alone time with her and confess their feelings. However, this is a very extreme and wrong way to go about it. Another possibility is a group of thieves who think Haruhi comes from a wealthy family and they can get a big ransom for her.
It could be some of the more radical pure - blood supremacists. They might see Draco as a symbol of the old pure - blood families that are starting to lose their influence. By kidnapping him, they hope to send a message to the Malfoy family and other pure - bloods that they need to be more aggressive in maintaining their status.