Another possibility is that there is some kind of dark influence at work. A powerful and malevolent force could be manipulating people's minds to turn them against Ash. This force might see Ash as a threat and use this underhanded method to get rid of him, causing his world to crumble as he is betrayed by all.
In such a fanfiction, Ash might become extremely isolated. He could lose faith in his Pokémon and himself. Maybe he'd leave the Pokémon world in despair, feeling that all his efforts were in vain. Without the support of his friends and Pokémon, his once - strong will to be a Pokémon Master could crumble completely.
The story could end with Ash forgiving everyone. Despite the betrayal, he realizes that his friends were misled or acting out of weakness. So he takes them back and they all learn from the experience, growing stronger together.
In a fanfiction like this, it could be that Percy's powers or abilities were starting to make others jealous. His friends might have felt overshadowed and, in a moment of weakness, turned on him. Also, there could be an outside influence, like a dark force that was manipulating people's minds to make them betray Percy.
Ash might be heartbroken at first. He'd feel a deep sense of loneliness and confusion.
Latias could initially go into hiding, feeling hurt and betrayed. She might avoid Ash at all costs. Then, Ash could realize his mistake and start searching for her to apologize.
Well, it might be that his rivals in the fanfiction somehow manage to deceive his Pokemon into thinking Ash is a bad trainer. Maybe they spread false rumors about how he doesn't really care for them, which causes the Pokemon to betray him. This would shatter Ash's world as his Pokemon are his closest friends and partners.
Perhaps Ash has been deceived by a false prophecy or a mysterious figure. This false information could lead him to believe that capturing Arceus is the only way to save the Pokémon world from an impending doom. So, in his misguided attempt, he betrays Arceus.
Well, in fanfiction, the author might create this situation to explore new storylines. Maybe the author wants to show Naruto's vulnerability. Erza could be made to betray Naruto due to some misinformation or a dark influence. For example, if there's an evil force that manipulates Erza into believing Naruto is a threat to her world or friends.
In some fanfiction, this could happen due to a misunderstanding. Maybe Hinata is forced into a situation where she has to seem like she's betraying Naruto. For example, she could be blackmailed by an enemy who threatens the safety of the village or her family. Another possibility is that there is some sort of mind - control involved that makes her act against Naruto.
In this kind of fanfiction, it might happen because of a misunderstanding. Maybe Rias is misled by false information about Naruto. For example, some villains could fabricate lies about Naruto's intentions or actions, causing Rias to believe he's a threat and thus betray him.