One possible plot twist could be that with Minato and Kushina alive, Naruto's training would be completely different. Minato, being a prodigy, could teach Naruto advanced jutsu much earlier. And Kushina might pass on some unique Uzumaki clan techniques. Maybe they would also change the political situation in Konoha, as Minato was a highly respected Hokage. This could lead to different alliances and power dynamics within the village and among the other ninja villages.
One possible plot could be that with Minato and Kushina alive, Naruto grows up in a complete family. They could train Naruto together, passing on their unique jutsu. Maybe Minato could finally fulfill his dream of bringing long - lasting peace to the Hidden Leaf with his family by his side. And Naruto would have a different kind of confidence and growth, not having to face the loneliness he did in the original story.
One possible plot twist could be that Naruto, instead of seeking acceptance in the village, decides to leave and find his own path outside. He might discover a hidden group or power that the village was unaware of and use it to come back and prove himself to his parents. Another twist could be that Naruto is taken in by an enemy of the village who sees his potential and trains him to be a powerful ninja, but for their own evil purposes. However, Naruto, having been ignored by his parents, might be more susceptible to this false sense of belonging.
One possible plot twist could be that Kushina's survival was part of a grand plan by an unknown entity. Maybe she was hidden away to protect Naruto from some greater threat that was yet to be revealed. Another aspect could be the emotional turmoil Naruto would go through. He'd be overjoyed, of course, but also confused and maybe a bit angry that he was made to believe she was dead all this time.
A plot twist could be that they see Naruto losing his way. This would be a huge shock for them as they always believed in Naruto's goodness. But then, as the story unfolds, Naruto finds his way back due to a memory or a message from his parents that he somehow receives in a moment of crisis.
There could be a plot twist where they are revived in a different time period. Maybe they are brought back during the era of the Sage of Six Paths. This would mean they have to adapt to a very different world with different rules and powers. Another plot twist could be that when they are revived, they are linked to an ancient evil. They have to fight this internal connection while also trying to figure out what has happened to the ninja world in their absence. Additionally, it could be that their revival was actually a test by the gods of the ninja world to see if they can bring about a new era of peace.
At first, Naruto might be in disbelief that his parents are alive. But then, he would quickly embrace the opportunity to have a family. Minato would be a strict but loving father, guiding Naruto in his ninja path. Kushina would be the warm - hearted mother, cooking for him and giving him emotional support. Minato and Kushina would also have a romantic relationship that Naruto would observe. This could also teach Naruto about love and commitment in a relationship. Their presence would make Naruto feel more complete and confident, and he would strive to make them proud.
It could completely change the dynamics of the Naruto universe. Their presence might have prevented many tragedies and shaped Naruto's life differently.
One possibility could be that Naruto discovers a long - hidden secret about his family that makes him feel betrayed. For example, he might find out that Minato and Kushina had made a deal with a dangerous enemy in the past that put the village at risk. This would be so against Naruto's values of protecting the village and his friends that he decides to leave them.
Maybe in the fanfiction, there is a powerful enemy who wants to use Naruto's connection to his parents against him. So, they somehow manage to bring Minato and Kushina back to the physical world. When they meet Naruto, it's an emotional moment. They form a plan to defeat the enemy together. Minato uses his strategic skills, Kushina her strength, and Naruto his own unique abilities learned over the years.
Perhaps they return to impart some final wisdom to Naruto. Minato could teach Naruto some advanced sealing techniques that he hadn't mastered yet, and Kushina could share more about the Uzumaki clan's secrets and how Naruto can further harness his Uzumaki heritage.