One idea could be Naruto somehow getting transported to the DC universe and joining the Justice League. He could use his ninja skills, like shadow clones, to confuse villains during battles. For example, when facing a powerful foe like Darkseid, Naruto's clones could swarm him, making it hard for him to target the real Naruto.
Another plot idea is that Naruto has to prove himself to the Justice League. They see his unorthodox fighting style and think he might be a liability. But Naruto then shows his determination and loyalty, like when he defends a member of the League from an ambush by the Legion of Doom. His rasengan could be a unique weapon against villains that the League hasn't seen before.
Maybe in this fanfiction, the chakra in Naruto is related to some sort of meta - human power in the DC world. The Justice League initially doubts Naruto's abilities but then realizes his chakra can be used to heal their wounds or even boost their powers. For instance, when Superman is weakened by kryptonite, Naruto uses his chakra to give Superman a temporary boost to fight back.
One plot idea could be the Justice League members learning Naruto's ninja techniques. They could incorporate these into their crime - fighting, while the harem aspect adds a layer of relationship drama and support among the characters.
One plot idea could be that Naruto is somehow transported to the Justice League universe. He meets various female heroes and they are intrigued by his unique abilities and his strong sense of justice. For example, he could team up with Wonder Woman and they start to develop a mutual respect that slowly turns into more. Another could be that a villain uses a spell to make all the female Justice League members attracted to Naruto at the same time, leading to a chaotic and comical situation as he tries to figure out how to handle it without causing rifts in the team.
One idea could be a crossover where the Young Justice team has to team up with the Justice League to face an interdimensional threat. Maybe a powerful villain from another dimension is trying to invade Earth and the combined skills and powers of both groups are needed to stop it.
Maybe a story where some of the younger members of the Young Justice team are frustrated with the Justice League's methods and decide to take on a mission on their own, but end up getting in over their heads and have to call in the League for help. This could lead to a lot of character development and some interesting dynamics between the two groups.
A really interesting plot idea would be if the Kyuubi's chakra somehow gets corrupted and Naruto starts to lose control. The Justice League has to help him regain his sanity and control over the Kyuubi. Also, a plot where the Justice League and Naruto with the Kyuubi team up to take on a powerful interdimensional being that is causing trouble in both their universes. They have to combine their different powers and strategies to win. And perhaps, there could be a sub - plot where Naruto tries to understand the different values and ethics of the Justice League members compared to his own ninja world.
One idea could be that the Justice League members gain new gaming - related powers. For example, Superman could have the ability to instantly analyze any opponent's weaknesses like a game character stats screen. Batman could use his detective skills to hack into virtual reality systems within the story's universe.
One idea could be a story where Batman has to lead the Justice League in a fight against a new, powerful and mysterious villain that can manipulate time. Another could be a fanfiction exploring the relationships within the Justice League when they are stranded on an uninhabited planet and have to rely on each other more than ever.
Perhaps in the fanfiction, there is a parallel universe where the Justice League are all vampires. They are trying to protect both the vampire and human populations from a greater evil that threatens to destroy both. They face challenges in getting the human - dominated Justice League in our universe to trust them and work together.
Maybe in the fanfiction, a new gamer is suddenly given the power to control the Justice League in a game, but they soon realize that their actions in the game are having real - world consequences, and they must team up with the heroes to set things right. This could lead to some really interesting character interactions as the inexperienced gamer tries to communicate with the heroes.
A crossover with the Avengers. Picture the Justice League and the Avengers having to work together to stop an interdimensional threat. There would be clashes in leadership styles between Captain America and Superman, and also a lot of cool moments as different power - sets are combined to fight the enemy.