There might be a fanfiction where Bonnie gets lost in an unfamiliar area in the Pokemon X and Y world and gets hurt while trying to find her way back. This could explore her resourcefulness and how the other characters come to her rescue.
One possible fanfiction could be about Bonnie getting hurt during a Pokemon battle. Maybe she tries to protect her Pokemon and ends up getting injured herself. It could show her courage and the bond between her and her Pokemon.
I'm not sure of a specific one off - hand. But you could try searching on fanfiction - dedicated websites like FanFiction.net or Archive of Our Own. Just type in 'Pokemon X and Y Bonnie hurt' in their search bars, and you should be able to find some relevant stories.
One possible scenario in fanfiction could be that Bonnie catches a strange illness from a new Pokemon she encounters in the Kalos region. This illness might cause her to lose her energy and enthusiasm, which are her usual traits. Her friends, Clemont and the protagonist, would then search for a cure.
One good 'Pokemon Yellow Hurt' fanfiction could be one where the main character's Pikachu gets injured during a tough battle against a powerful rival's Pokemon. In this fanfic, the trainer has to desperately find a way to heal Pikachu while facing various obstacles in the Pokemon world.
There is a fanfiction called 'When Pokemon Cry'. It's about a group of Pokemon who are hurt in a natural disaster and how they support and comfort each other during the recovery process. It shows the strong bond between Pokemon in difficult times. Another interesting one is 'Hurt and Hope', where a trainer helps his injured Growlithe regain its confidence after a brutal fight.
There could be a fanfiction where Judy gets hurt in a more emotional sense. For example, she discovers that a friend has betrayed her trust. This 'hurt' could be explored in depth, showing how it affects her relationships and her work in the Zootopia Police Department. It could involve her isolating herself for a while until she realizes she needs to face the situation.
I'm not sure specifically as there could be various interpretations. It might involve some dark or spooky events in the Pokemon X and Y universe, like strange disappearances of Pokemon or creepy encounters in certain areas.
One possible fanfiction could be 'Nova's Painful Encounter' where Nova faces a powerful villain alone and gets seriously injured while trying to protect civilians. The story might focus on how Spider - Man finds him and tries to get him to safety and medical help.
One good Pokemon Ash x Bonnie fanfiction could be 'The Unlikely Bond'. It explores their relationship in a unique way as they travel together. In this fanfic, Ash helps Bonnie understand more about Pokemon battles, while Bonnie teaches Ash about the importance of family outside of his Pokemon family. Another great one is 'A New Adventure'. It takes place in a new region where Ash and Bonnie have to rely on each other more than ever. It shows their growth as individuals and how their relationship deepens over time.
It could be about Shauna's journey in the Kalos region. Maybe it focuses on her interactions with the player character, her growth as a trainer, and her experiences with different Pokemon. For example, it might detail how she overcomes challenges in battles and forms deeper bonds with her Pokemon.
Well, she might become more vulnerable. Usually, Bonnie is full of life and always ready for an adventure. But when sick, she could be more dependent on others like Clemont. Her positive attitude might also be affected, and she could start to worry about not being able to keep up with her friends.