Well, the fanfic could start with Naruto being ambushed by a group of rogue ninjas. They use some sort of forbidden jutsu to steal his eyes. Naruto is then found by his village mates in a weakened state. The Hokage would order an immediate investigation. Meanwhile, Naruto has to deal with the psychological impact of losing his eyes. He might start having nightmares about not being able to see his friends' faces anymore. His friends, on the other hand, would be using all their resources and connections to track down the rogues. Sakura could be using her medical skills to see if there's any way to reverse the damage, while Sasuke is out there scouring the dangerous areas known for harbouring criminals.
In a 'Naruto has his eyes stolen' fanfic, the plot might revolve around a new, mysterious villain who targets Naruto specifically for his eyes. Maybe the villain believes Naruto's eyes hold some sort of special power or prophecy. Naruto, in his usual determined way, would not let this setback stop him. He could start training with Jiraiya again, this time focusing on his other senses to compensate for the loss of his eyes. His friends would be in a state of shock and anger, and they would split up to search for clues about the thief.
It could be a member of a long - forgotten clan that has a vendetta against the Uzumaki clan. They might believe that Naruto's eyes hold the key to their clan's downfall or revival, so they steal his eyes in an attempt to gain control over their own destiny.
Another suspect could be a rogue ninja from a hidden village that has a vendetta against Konoha. Naruto is a symbol of Konoha's strength, and by stealing his eyes, they could be trying to weaken the village both physically and symbolically. This ninja might have lost someone or something to Konoha and sees this as a way to get revenge.
One possible motive could be power. Naruto's eyes might possess some unique power in this fanfic, like the ability to control a powerful jutsu or access some hidden knowledge. The thief could want to use this power for their own gain, perhaps to take over a village or defeat their enemies.
The plot could involve Naruto's red eyes being the key to an ancient prophecy. People from other villages might try to capture him to use his eyes for their own gain. Naruto, along with his friends, would have to go on the run and protect himself while also trying to figure out the true meaning behind his red eyes.
Well, it could be about a secret mission in the Naruto world that only a chosen few are aware of. Maybe it involves protecting a powerful and ancient jutsu that must not fall into the wrong hands. Only the most trusted ninjas are entrusted with this mission, and they have to face many challenges along the way.
Maybe the 'naruto new eyes fanfic' could revolve around a character who is born with these new eyes but doesn't know how to control them at first. As they go through various challenges in the Naruto world, like battles and making alliances, they gradually learn to master their new eye power. For example, they might be able to use it to see through illusions that are even more powerful than those usually created in the Naruto universe.
A great plot could involve a mysterious figure who implants the Byakugan into Naruto for an unknown purpose. Naruto starts to see the world in a different way with his new eyes. He can now sense danger more easily and even predict his opponents' moves better. The story could then revolve around Naruto trying to find out who did this to him and why. Along the way, he teams up with some Hyuga members who teach him the secrets of the Byakugan, and together they face a common enemy that threatens the entire ninja world.
Well, if Naruto had 3 eyes in fanfiction, his visual perception would be greatly enhanced. He could potentially have a wider field of vision, like being able to see in more directions simultaneously. This might give him an edge in battle, as he could detect enemies coming from unexpected angles more easily.
The plot might involve Naruto getting Shisui's eyes in a strange accident. With these eyes, he discovers a hidden conspiracy within the Hidden Leaf Village. There are some rogue ninjas who are planning to use a powerful jutsu that can only be countered with the unique abilities of Shisui's eyes. Naruto, with his new - found powers, has to team up with his friends like Sasuke and Sakura to expose the conspiracy and save the village. Along the way, he struggles with controlling the Sharingan's powers and the emotions that come with it.
It could be a powerful new villain who wants to get back at Naruto. Maybe someone from a rival village who thinks stealing his wife will weaken him.